Proteomics in SyBIT
DATE : July 4th 2012
TIME: 09:15 - 16:15
REGISTRATION OVER List of attendants*
LOCATION: Bern, Chemie und Biochemie Room S 559 .. this is a 10min walk from the station
The theme is proteomics in general. Focus is on software, best practices, experiences, do's and dont's
- Proteomics tools, software
- Search engines
- Quantification tools
- Databases
- Automation
- Statistics, visualization
- Publication to PRIDE and others
- Archiving policies of data
- Standards
Agenda
Time | Speaker | Title | Slides |
|---|---|---|---|
| 9:00 - 9:15 | ARRIVAL |
|
|
9:15 - 09:30 | Peter Kunszt | Intro and usual news | |
09:30 - 10:00 | Pierre-Alain Binz | ProteomeXchange, Proteomics Standards and Evidence Based Annotation in UniProt |
|
10:00 - 10:30 | Franz-Josef Elmer | Examples of Proteomics Web Apps for openBIS | |
| 10:30 - 11:00 | BREAK |
|
|
11:00 - 11:30 | Christian Panse | FCC -> (F)GCZ (C)onverter (C)ontrol. about generic controlled processing of instrument files | |
11:30 - 11:45 | Simon Barkow | HiFly -> a small tool checking which peptides can 'fly' at all | |
11:45 - 12:15 | Jonas Grossmann | LFQ -> Label-free quantitation tips & tricks | |
| 12:15 - 13:30 | LUNCH BREAK |
|
|
13:30 - 14:15 | Hendrik Weisser | Label-free quantification with OpenMS |
|
14:15 - 14:45 | Hannes Röst or George Rosenberger | openSWATH |
|
| 14:45 - 15:15 | BREAK |
|
|
15:15 - 15:45 | Andreas Quandt | Generating automated workflows |
|
15:45 - 16:15 | Lorenz Blum & Witold Wolski | iPortal: Portlets & Workflows for proteomics analysis |
|
| 16:15 | DEPARTURE |
|
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Overview
Content Tools
Activity